Welcome to bioconda-recipes’s documentation!¶
Contents:
- age-metasv
- ansible
- appdirs
- argh
- arrow
- arvados-cli
- augustus
- autoconf
- awscli
- bamtools
- barrnap
- bcbio-nextgen-vm
- bcbio-nextgen
- bcbio-prioritize
- bcbio-rnaseq
- bcbio-variation-recall
- bcbio-variation
- bcbio_monitor
- bcbiogff
- bcbreport
- bcdoc
- bcftools
- bedtools
- bio-vcf
- bio_assembly_refinement
- bioawk
- biobambam
- bioblend
- bioconductor-affy
- bioconductor-affyio
- bioconductor-annotate
- bioconductor-annotationdbi
- bioconductor-annotationforge
- bioconductor-basic4cseq
- bioconductor-biobase
- bioconductor-biocgenerics
- bioconductor-biocinstaller
- bioconductor-biocparallel
- bioconductor-biocstyle
- bioconductor-biomart
- bioconductor-biostrings
- bioconductor-biovizbase
- bioconductor-bsgenome.ecoli.ncbi.20080805
- bioconductor-bsgenome.hsapiens.ucsc.hg19
- bioconductor-bsgenome.mmusculus.ucsc.mm9
- bioconductor-bsgenome
- bioconductor-bubbletree
- bioconductor-category
- bioconductor-chipcomp
- bioconductor-cn.mops
- bioconductor-complexheatmap
- bioconductor-csaw
- bioconductor-dada2
- bioconductor-degreport
- bioconductor-deseq
- bioconductor-deseq2
- bioconductor-dexseq
- bioconductor-diffbind
- bioconductor-dnacopy
- bioconductor-edger
- bioconductor-fourcseq
- bioconductor-genefilter
- bioconductor-geneplotter
- bioconductor-genomeinfodb
- bioconductor-genomicalignments
- bioconductor-genomicfeatures
- bioconductor-genomicranges
- bioconductor-geoquery
- bioconductor-ggbio
- bioconductor-go.db
- bioconductor-gostats
- bioconductor-graph
- bioconductor-graphite
- bioconductor-gseabase
- bioconductor-gviz
- bioconductor-iranges
- bioconductor-limma
- bioconductor-mmdiff
- bioconductor-multtest
- bioconductor-org.hs.eg.db
- bioconductor-organismdbi
- bioconductor-phyloseq
- bioconductor-preprocesscore
- bioconductor-rbgl
- bioconductor-regioner
- bioconductor-rhdf5
- bioconductor-rsamtools
- bioconductor-rtracklayer
- bioconductor-s4vectors
- bioconductor-shortread
- bioconductor-summarizedexperiment
- bioconductor-sva
- bioconductor-systempiper
- bioconductor-variantannotation
- bioconductor-xvector
- bioconductor-zlibbioc
- biom-format
- blast-legacy [linux64]
- blast
- blat [linux64]
- bleach
- bmfilter
- bmtagger
- bmtool
- botocore
- bottle
- bowtie
- bowtie2
- burrito-fillings
- burrito
- bwa
- bwakit
- bx-python
- byobu
- cage
- cancerit-allelecount
- cd-hit
- cdbtools [linux64]
- chanjo
- chromhmm
- circlator
- clark
- clearcut [linux64]
- clever-toolkit
- click
- cnvkit
- cogent
- cpat
- cramtools
- crossmap
- cufflinks
- curl
- cutadapt
- cyordereddict
- cyvcf2
- daligner
- datamash
- dazz_db
- deeptools
- delly
- diamond
- dropbox
- dxua
- ea-utils
- eigen
- elasticluster
- emperor
- epydoc
- ete2
- expat
- extract_fullseq
- fadapa
- fasta3
- fastq-join
- fastq-multx
- fastq-screen
- fastqc
- fasttree
- fastx_toolkit
- fftw
- filechunkio
- fisher
- flash
- freebayes
- ftputil
- functools32
- gat
- gatk-framework
- gemini
- geneimpacts
- genepop
- gffutils
- gfold
- ghc
- ghostscript
- glimmer
- glpk
- gmap
- gnuplot
- google-api-python-client
- grabix
- graphmap
- graphviz
- hall-lab-svtools
- hifive
- hisat2
- hmmer
- hmmlearn
- htseq
- htslib
- httplib2
- httpretty
- hubward-all
- hubward
- igblast
- igvtools
- infernal [linux64]
- infinity
- inheritance
- intervals
- intervalstats
- ipython-cluster-helper
- jamm
- java-jdk
- jellyfish
- jmespath
- joblib
- julia
- kallisto
- khmer
- knot
- kraken
- last
- libdb
- libgd
- libgtextutils
- libmagic
- libsvm
- libxml2
- lofreq
- logbook
- lumpy-sv
- m4
- macs2
- mafft
- mageck-vispr
- mageck
- manta
- mapsplice
- mash
- matplotlib-venn
- megahit
- metaseq-all
- metaseq
- metasv
- migmap
- miniasm
- minimap
- mirdeep2
- moreutils
- mosaik
- mothur [linux64]
- moto
- ms
- msms
- msprime
- mugsy [linux64]
- mummer
- muscle
- mvicuna
- mygene
- mysql-connector-c
- mysqlclient
- netifaces
- newt
- ngs-sdk
- novoalign
- oauth2client
- oligotyping
- oncofuse
- openbabel
- optitype
- p7zip
- parallel
- pathtools
- pbgzip
- peakranger
- peakzilla
- pear
- perl-app-cpanminus
- perl-archive-extract
- perl-archive-zip
- perl-bio-db-sam
- perl-bioperl
- perl-cgi
- perl-compress-raw-zlib
- perl-data-uuid
- perl-db-file
- perl-dbd-mysql
- perl-dbi
- perl-encode-locale
- perl-file-fetch
- perl-file-sharedir-install
- perl-file-sharedir
- perl-gd
- perl-gdgraph
- perl-gdtextutil
- perl-ipc-system-simple
- perl-lwp-protocol-https
- perl-lwp-simple
- perl-math-cdf
- perl-module-build
- perl-pcap
- perl-pdf-api2
- perl-sanger-allelecount
- perl-sanger-cgp-vcf
- perl-scalar-list-utils
- perl-set-intervaltree
- perl-statistics-descriptive
- perl-sub-uplevel
- perl-threaded
- perl-time-hires
- perl-uri
- perl-vcftools-vcf
- perl-xml-parser
- perl
- phonenumbers
- phylowgs
- picard
- pindel
- platypus-variant
- popt
- poretools
- prinseq
- prodigal
- protrac
- py-graphviz
- pyaml
- pyasn1-modules
- pybedtools
- pybigwig
- pycli
- pyfaidx
- pyfastaq
- pyloh
- pymummer
- pynast
- pyomo
- pyopt
- pyqi
- pysam
- pysamstats
- pysftp
- pytabix
- pytest-cov
- pytest-timeout
- python-dateutil
- python-igraph
- python-levenshtein
- python-magic
- python-wget
- pythonpy
- pyutilib
- pyvcf
- pyx
- qcli
- qsignature
- qualimap
- r-ade4
- r-amap
- r-ash
- r-batchjobs
- r-bbmisc
- r-bio3d
- r-biom
- r-bit
- r-bit64
- r-catools
- r-cghflasso
- r-chbutils
- r-checkmate
- r-circlize
- r-compute.es
- r-corrplot
- r-dbchip
- r-dendextend
- r-diagram
- r-discriminer
- r-docopt
- r-dunn.test
- r-fail
- r-fda
- r-flowr
- r-funr
- r-futile.logger
- r-futile.options
- r-future
- r-getopt
- r-getoptlong
- r-ggally
- r-ggdendro
- r-globaloptions
- r-globals
- r-gmd
- r-gsalib
- r-hdrcde
- r-hwriter
- r-ks
- r-lambda.r
- r-listenv
- r-locfit
- r-lsd
- r-matrixstats
- r-mclust
- r-misc3d
- r-multicool
- r-nozzle.r1
- r-optparse
- r-params
- r-pcapp
- r-permute
- r-pheatmap
- r-pore
- r-pscbs
- r-r.cache
- r-r.methodss3
- r-r.oo
- r-r.utils
- r-rainbow
- r-rappdirs
- r-rcircos
- r-rjson
- r-sendmailr
- r-seqinr
- r-shape
- r-signal
- r-sleuth
- r-snow
- r-spp
- r-statmod
- r-svdialogs
- r-svgui
- r-tximport
- r-venndiagram
- r-viridis
- r-wasabi
- r-writexls
- raxml
- razers3
- requests-toolbelt
- retrying
- rnacode
- rnashapes
- rnastructure
- rpy2
- rsa
- rseg
- rsem
- rseqc
- rtg-tools
- ruby
- rust
- s3gof3r
- sailfish
- salmon
- sambamba
- samblaster
- samtools
- scalpel
- scikit-bio
- screed
- scrm
- semidbm
- seqbuster
- seqcluster
- seqprep
- seqtk
- setuptools_cython
- sga
- sickle-trim
- sickle
- simple_sv_annotation
- simplejson
- slang
- snakemake
- snippy
- snpeff
- sortmerna [linux64]
- spades
- sparsehash
- sphinxcontrib-programoutput
- sqt
- srprism
- stamp
- star-fusion
- star
- stringtie
- subread
- suma_package [linux64]
- sure
- svgutils
- svgwrite
- svtyper
- swarm [linux64]
- t_coffee
- tabulate
- tbb
- tdrmapper
- theta2
- tmux
- tophat
- toposort
- trackhub
- trimmomatic
- trinity
- ucsc-axttomaf
- ucsc-axttopsl
- ucsc-bedclip
- ucsc-bedcommonregions
- ucsc-bedcoverage
- ucsc-bedextendranges
- ucsc-bedgeneparts
- ucsc-bedgraphpack
- ucsc-bedgraphtobigwig
- ucsc-bedintersect
- ucsc-beditemoverlapcount
- ucsc-bedpileups
- ucsc-bedremoveoverlap
- ucsc-bedrestricttopositions
- ucsc-bedsort
- ucsc-bedtobigbed
- ucsc-bedtogenepred
- ucsc-bedtopsl
- ucsc-bedweedoverlapping
- ucsc-bigbedinfo
- ucsc-bigbednameditems
- ucsc-bigbedsummary
- ucsc-bigbedtobed
- ucsc-bigwigaverageoverbed
- ucsc-bigwigcat
- ucsc-bigwigcluster
- ucsc-bigwigcorrelate
- ucsc-bigwiginfo
- ucsc-bigwigmerge
- ucsc-bigwigsummary
- ucsc-bigwigtobedgraph
- ucsc-bigwigtowig
- ucsc-blasttopsl
- ucsc-chainantirepeat
- ucsc-chainfilter
- ucsc-chainmergesort
- ucsc-chainnet
- ucsc-chainprenet
- ucsc-chainsort
- ucsc-chainsplit
- ucsc-chainstitchid
- ucsc-chainswap
- ucsc-chaintoaxt
- ucsc-chaintopsl
- ucsc-chaintopslbasic
- ucsc-crtreeindexbed
- ucsc-crtreesearchbed
- ucsc-fatotwobit
- ucsc-fetchchromsizes
- ucsc-genepredtobed
- ucsc-genepredtofakepsl
- ucsc-genepredtomafframes
- ucsc-gff3topsl
- ucsc-gtftogenepred
- ucsc-hgloadbed
- ucsc-hgloadchain
- ucsc-hgloadmaf
- ucsc-hgloadwiggle
- ucsc-lavtopsl
- ucsc-liftover
- ucsc-liftup
- ucsc-mafaddirows
- ucsc-mafaddqrows
- ucsc-mafcoverage
- ucsc-maffetch
- ucsc-maffilter
- ucsc-maffrag
- ucsc-maffrags
- ucsc-mafgene
- ucsc-mafmefirst
- ucsc-maforder
- ucsc-mafranges
- ucsc-mafsinregion
- ucsc-mafspecieslist
- ucsc-mafspeciessubset
- ucsc-mafsplit
- ucsc-mafsplitpos
- ucsc-maftoaxt
- ucsc-maftopsl
- ucsc-maftosnpbed
- ucsc-netchainsubset
- ucsc-nettobed
- ucsc-pslcat
- ucsc-pslcdnafilter
- ucsc-pslcheck
- ucsc-psldropoverlap
- ucsc-pslfilter
- ucsc-pslhisto
- ucsc-pslliftsubrangeblat
- ucsc-pslmap
- ucsc-pslmrnacover
- ucsc-pslpairs
- ucsc-pslpartition
- ucsc-pslpostarget
- ucsc-pslpretty
- ucsc-pslrecalcmatch
- ucsc-pslreps
- ucsc-pslscore
- ucsc-pslselect
- ucsc-pslsort
- ucsc-pslstats
- ucsc-pslswap
- ucsc-psltobed
- ucsc-psltochain
- ucsc-psltopslx
- ucsc-pslxtofa
- ucsc-qactowig
- ucsc-wigcorrelate
- ucsc-wigtobigwig
- uritemplate
- urllib3
- validators
- vardict-java
- vardict
- variant-effect-predictor
- variantbam
- varscan
- vawk
- vcflib
- vcftools
- viennarna
- vispr
- voluptuous
- vphaser2
- vsearch
- vt
- watchdog
- weblogo
- wham
- whatshap
- ws4py
- wtforms-components
- xmltodict
- xsv
- yaggo
- yanc