bcftools

Summary

BCFtools is a set of utilities that manipulate variant calls in the Variant Call Format (VCF) and its binary counterpart BCF. All commands work transparently with both VCFs and BCFs, both uncompressed and BGZF-compressed. Most commands accept VCF, bgzipped VCF and BCF with filetype detected automatically even when streaming from a pipe. Indexed VCF and BCF will work in all situations. Un-indexed VCF and BCF and streams will work in most, but not all situations.

Versions

  • 1.3
  • 1.2

License

MIT

Meta

about:
  home: https://github.com/samtools/bcftools
  license: MIT
  summary: BCFtools is a set of utilities that manipulate variant calls in the Variant
    Call Format (VCF) and its binary counterpart BCF. All commands work transparently
    with both VCFs and BCFs, both uncompressed and BGZF-compressed.  Most commands
    accept VCF, bgzipped VCF and BCF with filetype detected automatically even when
    streaming from a pipe. Indexed VCF and BCF will work in all situations. Un-indexed
    VCF and BCF and streams will work in most, but not all situations.
build:
  number: 0
package:
  name: bcftools
  version: '1.3'
requirements:
  build:
  - zlib ==1.2.8
  run:
  - zlib ==1.2.8
source:
  fn: bcftools-1.3.tar.bz2
  sha256: fc5332e49546d55120551b0d5fb690f79e4f2216b8492c7b53033cdaa4256a3d
  url: https://github.com/samtools/bcftools/releases/download/1.3/bcftools-1.3.tar.bz2
test:
  commands:
    - "bcftools -h > /dev/null"
    - bcftools --version