bioconductor-genomicfeatures

Summary

A set of tools and methods for making and manipulating transcript centric annotations. With these tools the user can easily download the genomic locations of the transcripts, exons and cds of a given organism, from either the UCSC Genome Browser or a BioMart database (more sources will be supported in the future). This information is then stored in a local database that keeps track of the relationship between transcripts, exons, cds and genes. Flexible methods are provided for extracting the desired features in a convenient format.

Versions

  • 1.22.6

License

Artistic-2.0

Meta

package:
  name: bioconductor-genomicfeatures
  version: 1.22.6
source:
  fn: GenomicFeatures_1.22.6.tar.gz
  url: http://bioconductor.org/packages/release/bioc/src/contrib/GenomicFeatures_1.22.6.tar.gz
  md5: 545870dce3fd9d04726943cc8158c05b
build:
  number: 0
  rpaths:
    - lib/R/lib/
    - lib/
requirements:
  build:
    - 'bioconductor-annotationdbi >=1.27.9'
    - 'bioconductor-biobase >=2.15.1'
    - 'bioconductor-biocgenerics >=0.1.0'
    - 'bioconductor-biomart >=2.17.1'
    - 'bioconductor-biostrings >=2.23.3'
    - 'bioconductor-genomeinfodb >=1.5.16'
    - 'bioconductor-genomicranges >=1.21.32'
    - 'bioconductor-iranges >=2.3.21'
    - 'bioconductor-rtracklayer >=1.29.24'
    - 'bioconductor-s4vectors >=0.7.17'
    - bioconductor-xvector
    - r
    - 'r-dbi'
    - r-rcurl
    - 'r-rsqlite'
  run:
    - 'bioconductor-annotationdbi >=1.27.9'
    - 'bioconductor-biobase >=2.15.1'
    - 'bioconductor-biocgenerics >=0.1.0'
    - 'bioconductor-biomart >=2.17.1'
    - 'bioconductor-biostrings >=2.23.3'
    - 'bioconductor-genomeinfodb >=1.5.16'
    - 'bioconductor-genomicranges >=1.21.32'
    - 'bioconductor-iranges >=2.3.21'
    - 'bioconductor-rtracklayer >=1.29.24'
    - 'bioconductor-s4vectors >=0.7.17'
    - bioconductor-xvector
    - r
    - 'r-dbi'
    - r-rcurl
    - 'r-rsqlite'
test:
  commands:
    - '$R -e "library(''GenomicFeatures'')"'
about:
  home: http://bioconductor.org/packages/release/bioc/html/GenomicFeatures.html
  license: Artistic-2.0
  summary: 'A set of tools and methods for making and manipulating transcript centric
    annotations. With these tools the user can easily download the genomic locations
    of the transcripts, exons and cds of a given organism, from either the UCSC Genome
    Browser or a BioMart database (more sources will be supported in the future).
    This information is then stored in a local database that keeps track of the relationship
    between transcripts, exons, cds and genes. Flexible methods are provided for extracting
    the desired features in a convenient format.'