bioconductor-genomicranges

Summary

The ability to efficiently represent and manipulate genomic annotations and alignments is playing a central role when it comes to analyzing high-throughput sequencing data (a.k.a. NGS data). The GenomicRanges package defines general purpose containers for storing and manipulating genomic intervals and variables defined along a genome. More specialized containers for representing and manipulating short alignments against a reference genome, or a matrix-like summarization of an experiment, are defined in the GenomicAlignments and SummarizedExperiment packages respectively. Both packages build on top of the GenomicRanges infrastructure.

Versions

  • 1.22.3

License

Artistic-2.0

Meta

package:
  name: bioconductor-genomicranges
  version: 1.22.3
source:
  fn: GenomicRanges_1.22.3.tar.gz
  url: https://bioconductor.org/packages/release/bioc/src/contrib/GenomicRanges_1.22.3.tar.gz
  md5: 9b39b784e91803b31fc861438ba3831e
build:
  number: 0
  rpaths:
    - lib/R/lib/
    - lib/
requirements:
  build:
    - 'bioconductor-biocgenerics >=0.16.1'
    - 'bioconductor-genomeinfodb >=1.1.20'
    - 'bioconductor-iranges >=2.4.6'
    - 'bioconductor-s4vectors >=0.8.1'
    - bioconductor-xvector
    - 'r >=2.10'
  run:
    - 'bioconductor-biocgenerics >=0.16.1'
    - 'bioconductor-genomeinfodb >=1.1.20'
    - 'bioconductor-iranges >=2.4.6'
    - 'bioconductor-s4vectors >=0.8.1'
    - bioconductor-xvector
    - 'r >=2.10'
test:
  commands:
    - '$R -e "library(''GenomicRanges'')"'
about:
  home: http://bioconductor.org/packages/release/bioc/html/GenomicRanges.html
  license: Artistic-2.0
  summary: 'The ability to efficiently represent and manipulate genomic annotations
    and alignments is playing a central role when it comes to analyzing high-throughput
    sequencing data (a.k.a. NGS data). The GenomicRanges package defines general purpose
    containers for storing and manipulating genomic intervals and variables defined
    along a genome. More specialized containers for representing and manipulating
    short alignments against a reference genome, or a matrix-like summarization of
    an experiment, are defined in the GenomicAlignments and SummarizedExperiment packages
    respectively. Both packages build on top of the GenomicRanges infrastructure.'