bioconductor-gviz

Summary

Genomic data analyses requires integrated visualization of known genomic information and new experimental data. Gviz uses the biomaRt and the rtracklayer packages to perform live annotation queries to Ensembl and UCSC and translates this to e.g. gene/transcript structures in viewports of the grid graphics package. This results in genomic information plotted together with your data.

Versions

  • 1.14.2

License

Artistic-2.0

Meta

package:
  name: bioconductor-gviz
  version: 1.14.2
source:
  fn: Gviz_1.14.2.tar.gz
  url: https://bioconductor.org/packages/release/bioc/src/contrib/Gviz_1.14.2.tar.gz
  md5: 1578829f0f2a85a41cbb0d82cdbda6b0
build:
  number: 0
  rpaths:
    - lib/R/lib/
    - lib/
requirements:
  build:
    - 'bioconductor-s4vectors >=0.1.0'
    - 'bioconductor-iranges >=1.99.18'
    - 'bioconductor-genomicranges >=1.17.20'
    - 'bioconductor-xvector >=0.5.7'
    - 'bioconductor-rtracklayer >=1.25.13'
    - 'bioconductor-biomart >=2.11.0'
    - 'bioconductor-annotationdbi >=1.27.5'
    - 'bioconductor-biobase >=2.15.3'
    - 'bioconductor-genomicfeatures >=1.17.22'
    - 'bioconductor-bsgenome >=1.33.1'
    - 'bioconductor-biostrings >=2.33.11'
    - 'bioconductor-biovizbase >=1.13.8'
    - 'bioconductor-genomicalignments >=1.1.16'
    - 'bioconductor-genomeinfodb >=1.5.14'
    - 'bioconductor-biocgenerics >=0.11.3'
    - 'r >=2.10'
    - r-lattice
    - 'r-latticeextra >=0.6_26'
    - r-rcolorbrewer
    - r-matrixstats >=0.8.14
    - 'r-digest >=0.6.8'

  run:
    - 'bioconductor-s4vectors >=0.1.0'
    - 'bioconductor-iranges >=1.99.18'
    - 'bioconductor-genomicranges >=1.17.20'
    - 'bioconductor-xvector >=0.5.7'
    - 'bioconductor-rtracklayer >=1.25.13'
    - 'bioconductor-biomart >=2.11.0'
    - 'bioconductor-annotationdbi >=1.27.5'
    - 'bioconductor-biobase >=2.15.3'
    - 'bioconductor-genomicfeatures >=1.17.22'
    - 'bioconductor-bsgenome >=1.33.1'
    - 'bioconductor-biostrings >=2.33.11'
    - 'bioconductor-biovizbase >=1.13.8'
    - 'bioconductor-genomicalignments >=1.1.16'
    - 'bioconductor-genomeinfodb >=1.5.14'
    - 'bioconductor-biocgenerics >=0.11.3'
    - 'r >=2.10'
    - r-lattice
    - 'r-latticeextra >=0.6_26'
    - r-rcolorbrewer
    - r-matrixstats >=0.8.14
    - 'r-digest >=0.6.8'

test:
  commands:
    - '$R -e "library(''Gviz'')"'
about:
  home: http://bioconductor.org/packages/release/bioc/html/Gviz.html
  license: Artistic-2.0
  summary: 'Genomic data analyses requires integrated visualization of known genomic
    information and new experimental data. Gviz uses the biomaRt and the rtracklayer
    packages to perform live annotation queries to Ensembl and UCSC and translates this
    to e.g. gene/transcript structures in viewports of the grid graphics package. This
    results in genomic information plotted together with your data.'