bioconductor-mmdiff

Summary

This package detects statistically significant difference between read enrichment profiles in different ChIP-Seq samples. To take advantage of shape differences it uses Kernel methods (Maximum Mean Discrepancy, MMD).

Versions

  • 1.10.0

License

Artistic-2.0

Meta

package:
  name: bioconductor-mmdiff
  version: 1.10.0

source:
  fn: MMDiff_1.10.0.tar.gz
  url: http://bioconductor.org/packages/release/bioc/src/contrib/MMDiff_1.10.0.tar.gz
  md5: 79a1f6646081d5c09621a80a26945516

build:
  number: 0
  rpaths:
    - lib/R/lib/
    - lib/

requirements:
  build:
    - 'r >=2.14.0'
    - bioconductor-genomicranges
    - bioconductor-diffbind
    - r-gmd 
    - bioconductor-rsamtools
    - bioconductor-iranges
    - bioconductor-biobase
  run:
    - 'r >=2.14.0'
    - bioconductor-genomicranges
    - bioconductor-diffbind
    - r-gmd
    - bioconductor-rsamtools
    - bioconductor-iranges
    - bioconductor-biobase

test:
  commands:
    - '$R -e "library(''MMDiff'')"'

about:
  home: http://bioconductor.org/packages/release/bioc/html/MMDiff.html
  license: Artistic-2.0
  summary: 'This package detects statistically significant difference between read enrichment profiles in different ChIP-Seq samples. To take advantage of shape differences it uses Kernel methods (Maximum Mean Discrepancy, MMD).'