bioconductor-rtracklayer

Summary

Extensible framework for interacting with multiple genome browsers (currently UCSC built-in) and manipulating annotation tracks in various formats (currently GFF, BED, bedGraph, BED15, WIG, BigWig and 2bit built-in). The user may export/import tracks to/from the supported browsers, as well as query and modify the browser state, such as the current viewport.

Versions

  • 1.30.1

License

Artistic-2.0

Meta

package:
  name: bioconductor-rtracklayer
  version: 1.30.1
source:
  fn: rtracklayer_1.30.1.tar.gz
  url: http://bioconductor.org/packages/release/bioc/src/contrib/rtracklayer_1.30.1.tar.gz
  md5: 5e2311cb886a68e7ad407218e70b5952
build:
  number: 0
  rpaths:
    - lib/R/lib/
    - lib/
requirements:
  build:
    - 'bioconductor-biocgenerics >=0.13.8'
    - 'bioconductor-biostrings >=2.37.1'
    - 'bioconductor-genomeinfodb >=1.3.14'
    - 'bioconductor-genomicalignments >=1.5.4'
    - 'bioconductor-genomicranges >=1.21.20'
    - 'bioconductor-iranges >=2.3.7'
    - 'bioconductor-rsamtools >=1.17.8'
    - 'bioconductor-s4vectors >=0.7.11'
    - 'bioconductor-xvector >=0.9.4'
    - bioconductor-zlibbioc
    - 'r >=2.10'
    - 'r-rcurl >=1.4-2'
    - 'r-xml >=1.98-0'
  run:
    - 'bioconductor-biocgenerics >=0.13.8'
    - 'bioconductor-biostrings >=2.37.1'
    - 'bioconductor-genomeinfodb >=1.3.14'
    - 'bioconductor-genomicalignments >=1.5.4'
    - 'bioconductor-genomicranges >=1.21.20'
    - 'bioconductor-iranges >=2.3.7'
    - 'bioconductor-rsamtools >=1.17.8'
    - 'bioconductor-s4vectors >=0.7.11'
    - 'bioconductor-xvector >=0.9.4'
    - bioconductor-zlibbioc
    - 'r >=2.10'
    - 'r-rcurl >=1.4-2'
    - 'r-xml >=1.98-0'
test:
  commands:
    - '$R -e "library(''rtracklayer'')"'
about:
  home: http://bioconductor.org/packages/release/bioc/html/rtracklayer.html
  license: Artistic-2.0
  summary: 'Extensible framework for interacting with multiple genome browsers (currently
    UCSC built-in) and manipulating annotation tracks in various formats (currently
    GFF, BED, bedGraph, BED15, WIG, BigWig and 2bit built-in). The user may export/import
    tracks to/from the supported browsers, as well as query and modify the browser
    state, such as the current viewport.'