bioconductor-variantannotation

Summary

Annotate variants, compute amino acid coding changes, predict coding outcomes

Versions

  • 1.16.4

License

Artistic-2.0

Meta

package:
  name: bioconductor-variantannotation
  version: 1.16.4
source:
  fn: VariantAnnotation_1.16.4.tar.gz
  url: http://bioconductor.org/packages/release/bioc/src/contrib/VariantAnnotation_1.16.4.tar.gz
  md5: 03f51aaa15fa2824154a5e328b2b209c
build:
  number: 0
  rpaths:
    - lib/R/lib/
    - lib/
requirements:
  build:
    - 'bioconductor-annotationdbi >=1.27.9'
    - bioconductor-biobase
    - 'bioconductor-biocgenerics >=0.15.3'
    - 'bioconductor-biostrings >=2.33.5'
    - 'bioconductor-bsgenome >=1.37.6'
    - 'bioconductor-genomeinfodb >=1.1.3'
    - 'bioconductor-genomicfeatures >=1.19.17'
    - 'bioconductor-genomicranges >=1.19.47'
    - 'bioconductor-iranges >=2.3.25'
    - 'bioconductor-rsamtools >=1.19.52'
    - 'bioconductor-rtracklayer >=1.25.16'
    - 'bioconductor-s4vectors >=0.7.11'
    - 'bioconductor-summarizedexperiment >=0.3.1'
    - 'bioconductor-xvector >=0.5.6'
    - bioconductor-zlibbioc
    - 'r >=2.8.0'
    - r-dbi
  run:
    - 'bioconductor-annotationdbi >=1.27.9'
    - bioconductor-biobase
    - 'bioconductor-biocgenerics >=0.15.3'
    - 'bioconductor-biostrings >=2.33.5'
    - 'bioconductor-bsgenome >=1.37.6'
    - 'bioconductor-genomeinfodb >=1.1.3'
    - 'bioconductor-genomicfeatures >=1.19.17'
    - 'bioconductor-genomicranges >=1.19.47'
    - 'bioconductor-iranges >=2.3.25'
    - 'bioconductor-rsamtools >=1.19.52'
    - 'bioconductor-rtracklayer >=1.25.16'
    - 'bioconductor-s4vectors >=0.7.11'
    - 'bioconductor-summarizedexperiment >=0.3.1'
    - 'bioconductor-xvector >=0.5.6'
    - bioconductor-zlibbioc
    - 'r >=2.8.0'
    - r-dbi
test:
  commands:
    - '$R -e "library(''VariantAnnotation'')"'
about:
  home: http://bioconductor.org/packages/release/bioc/html/VariantAnnotation.html
  license: Artistic-2.0
  summary: 'Annotate variants, compute amino acid coding changes, predict coding outcomes'