bmtagger¶

Summary¶

BMTagger aka Best Match Tagger is for removing human reads from metagenomics datasets

Home¶

ftp://ftp.ncbi.nlm.nih.gov/pub/agarwala/bmtagger/

Versions¶

3.101

License¶

Public Domain

Meta¶

package:
    name: bmtagger
    version: 3.101
source:
    fn: bmtools.tar.gz # [linux]
    url: ftp://ftp.ncbi.nlm.nih.gov/pub/agarwala/bmtagger/bmtools.tar.gz # [linux]
    md5: 719474a0e3b54449cbe06f6e442994dd # [linux]
    fn: bmtagger.sh # [osx]
    url: ftp://ftp.ncbi.nlm.nih.gov/pub/agarwala/bmtagger/mac-os/bmtagger.sh # [osx]
build:
    number: 1
requirements:
  build:
    #- gcc
    - blast
    - srprism
    - bmfilter
    - bmtool
    - extract_fullseq
  run:
    #- libgcc
    - blast
    - srprism
    - bmfilter
    - bmtool
    - extract_fullseq
test:
    commands:
        - "bmtagger.sh -V &> /dev/null" # [linux]
        # to test on mac you need gnugetopt installed from homebrew / macports 
about:
    home: ftp://ftp.ncbi.nlm.nih.gov/pub/agarwala/bmtagger/
    license: Public Domain
    summary: BMTagger aka Best Match Tagger is for removing human reads from metagenomics datasets