chromhmm

Summary

ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modifications to discover de novo the major re-occuring combinatorial and spatial patterns of marks.

Versions

  • 1.11

License

GPLv3

Meta

package:
  name: chromhmm
  version: 1.11

source:
  fn: ChromHMM.zip
  url: http://compbio.mit.edu/ChromHMM/ChromHMM.zip
  md5: bc114f31467a8b40b1d18d46e83c834a

build:
  detect_binary_files_with_prefix: True
  number: 0

requirements:
  run:
    - java-jdk

test:
  commands:
    - "ChromHMM.sh -Xmx512M BinarizeBam | grep -q 'usage BinarizeBam'"

about:
  home: http://compbio.mit.edu/ChromHMM/
  license: GPLv3
  summary: 'ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modifications to discover de novo the major re-occuring combinatorial and spatial patterns of marks.'