jamm

Summary

JAMM is a peak finder for NGS datasets (ChIP-Seq, ATAC-Seq, DNase-Seq..etc.) that can integrate replicates and assign peak boundaries accurately.

Versions

  • 1.0.7.2

License

GPL

Meta

package:
  name: jamm
  version: 1.0.7.2

source:
  fn: v1.0.7.2.zip
  url: https://github.com/mahmoudibrahim/JAMM/archive/v1.0.7.2.zip
  md5: 0902ea81e0559a8804c49dd7b1f02efd
  patches:
    - setpath.patch

build:
  number: 1

requirements:

  run:
    - r >=3
    - perl
    - r-signal
    - r-mclust >=4
 
test:

  commands:
    - JAMM.sh | grep JAMM > /dev/null
    - SignalGenerator.sh | grep JAMM > /dev/null

about:
  home: https://github.com/mahmoudibrahim/JAMM
  license: GPL
  license_file: LICENSE
  summary: JAMM is a peak finder for NGS datasets (ChIP-Seq, ATAC-Seq, DNase-Seq..etc.) that can integrate replicates and assign peak boundaries accurately.