khmer

Summary

khmer is a library and suite of command line tools for working with DNA sequence. It is primarily aimed at short-read sequencing data such as that produced by the Illumina platform. khmer takes a k-mer-centric approach to sequence analysis, hence the name.

Versions

  • 2.0

License

BSD-3-Clause

Meta

about:
  home: https://khmer.readthedocs.org/
  license: BSD-3-Clause
  summary: 'khmer is a library and suite of command line tools for working with DNA
    sequence. It is primarily aimed at short-read sequencing data such as that produced
    by the Illumina platform. khmer takes a k-mer-centric approach to sequence analysis,
    hence the name.'
build:
  number: 0
package:
  name: khmer
  version: '2.0'
requirements:
  build:
  - python
  - bz2file ==0.98
  - screed ==0.9
  run:
  - python
  - bz2file ==0.98
  - screed ==0.9
source:
  fn: khmer-2.0.tar.gz
  sha256: 6a8c6809b50adaf2d7d7307eefcca173f4b536329562530400fb1c88a12e6071
  url: https://pypi.python.org/packages/source/k/khmer/khmer-2.0.tar.gz
test:
  imports:
    - khmer
    - khmer.kfile
    - khmer.khmer_args
    - khmer.utils