oligotyping

Summary

The oligotyping and minimum entropy decomposition (MED) pipeline for the analysis of marker gene amplicons

Versions

  • 2.0

License

GNU General Public License v3 or later (GPLv3+)

Meta

package:
  name: oligotyping
  version: "2.0"

source:
  fn: oligotyping-2.0.tar.gz
  url: https://pypi.python.org/packages/source/o/oligotyping/oligotyping-2.0.tar.gz
  md5: 2159126a355bf3429418224ab17d5a56
#  patches:
   # List any patch files here
   # - fix.patch

build:
  skip: True # [not py27]
  # noarch_python: True
  # preserve_egg_dir: True
  # entry_points:
    # Put any entry points (scripts to be generated automatically) here. The
    # syntax is module:function.  For example
    #
    # - oligotyping = oligotyping:main
    #
    # Would create an entry point called oligotyping that calls oligotyping.main()


  # If this is a new build for the same version, increment the build
  # number. If you do not include this key, it defaults to 0.
  # number: 1

requirements:
  build:
    - python
    - setuptools
    - matplotlib
    - biopython
    - scipy
    - django

  run:
    - python
    - matplotlib
    - biopython
    - scipy
    - django
    - blast
    - r-vegan
    - r-ggplot2
    - r-gplots
    - r-gtools
    - r-reshape
    - r-optparse
    - r-pheatmap
    - r-rcolorbrewer
    - r-compute.es

test :
  # Python imports
  imports:
    - Oligotyping
    - Oligotyping.lib
    - Oligotyping.utils
    - Oligotyping.utils.html
    - Oligotyping.visualization

  # commands:
    # You can put test commands to be run here.  Use this to test that the
    # entry points work.


  # You can also put a file called run_test.py in the recipe that will be run
  # at test time.

  # requires:
    # Put any additional test requirements here.  For example
    # - nose

about:
  home: http://oligotyping.org
  license: GNU General Public License v3 or later (GPLv3+)
  summary: 'The oligotyping and minimum entropy decomposition (MED) pipeline for the analysis of marker gene amplicons'

# See
# http://docs.continuum.io/conda/build.html for
# more information about meta.yaml