optitype

Summary

Precision HLA typing from next-generation sequencing data

Versions

  • 2015.10.20

License

BSD

Meta

package:
  name: optitype
  version: 2015.10.20
build:
  number: 1
  skip: True # [not py27]
source:
  fn: optitype-8961c1d.tar.gz
  url: https://github.com/FRED-2/OptiType/archive/8961c1d.tar.gz

requirements:
  build:
    - python
  run:
    - python
    - numpy
    - pyomo
    - hdf5
    - pytables
    - pandas
    - pysam
    - matplotlib
    - samtools
    - glpk
    - razers3

test:
  commands:
    - OptiTypePipeline.py -h

about:
  home: https://github.com/FRED-2/OptiType
  license: BSD
  summary: Precision HLA typing from next-generation sequencing data