pindel

Summary

Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data

Versions

  • 0.2.5b8

License

GPLv3

Meta

package:
  name: pindel
  version: '0.2.5b8'
build:
  number: 0
source:
  fn: pindel-0.2.5b8.tar.gz
  url: https://github.com/genome/pindel/archive/v0.2.5b8.tar.gz

requirements:
  build:
    - htslib
  run:
    - htslib

test:
  commands:
    - "pindel -h 2>&1 | grep 'Pindel version'"
    - "pindel2vcf  --help | grep Example:"

about:
  home: http://gmt.genome.wustl.edu/packages/pindel/index.html
  license: GPLv3
  summary: Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data