r-dendextend

Summary

Offers a set of functions for extending dendrogram objects in R, letting you visualize and compare trees of hierarchical clusterings. You can (1) Adjust a tree’s graphical parameters - the color, size, type, etc of its branches, nodes and labels. (2) Visually and statistically compare different dendrograms to one another.

Versions

  • 1.1.2

License

GPL-2 | GPL-3

Meta

package:
  name: r-dendextend
  # Note that conda versions cannot contain -, so any -'s in the version have
  # been replaced with _'s.
  version: "1.1.2"

source:
  fn: dendextend_1.1.2.tar.gz
  url:
    - http://cran.r-project.org/src/contrib/dendextend_1.1.2.tar.gz
    - http://cran.r-project.org/src/contrib/Archive/dendextend/dendextend_1.1.2.tar.gz


  # You can add a hash for the file here, like md5 or sha1
  # md5: 49448ba4863157652311cc5ea4fea3ea
  # sha1: 3bcfbee008276084cbb37a2b453963c61176a322
  # patches:
   # List any patch files here
   # - fix.patch

build:
  # If this is a new build for the same version, increment the build
  # number. If you do not include this key, it defaults to 0.
  # number: 1

  # This is required to make R link correctly on Linux.
  rpaths:
    - lib/R/lib/
    - lib/

# Suggests: dendextendRcpp (>= 0.5.0), knitr, testthat, colorspace, ggplot2, plyr, ape, profdpm, microbenchmark, gplots, NMF, d3heatmap, dynamicTreeCut, pvclust, corrplot, DendSer, MASS, cluster, circlize (>= 0.2.5), covr
requirements:
  build:
    - r
    - r-magrittr >=1.0.1
    - r-whisker

  run:
    - r
    - r-magrittr >=1.0.1
    - r-whisker

test:
  commands:
    # You can put additional test commands to be run here.
    - $R -e "library('dendextend')" # [not win]
    - "\"%R%\" -e \"library('dendextend')\"" # [win]

  # You can also put a file called run_test.py, run_test.sh, or run_test.bat
  # in the recipe that will be run at test time.

  # requires:
    # Put any additional test requirements here.

about:
  home: http://cran.r-project.org/package=dendextend, https://github.com/talgalili/dendextend/,
    http://www.r-statistics.com/tag/dendextend/, http://bioinformatics.oxfordjournals.org/content/early/2015/08/18/bioinformatics.btv428
  license: GPL-2 | GPL-3
  summary: Offers a set of functions for extending dendrogram objects in R, letting you visualize
    and compare trees of hierarchical clusterings. You can (1) Adjust a tree's graphical
    parameters - the color, size, type, etc of its branches, nodes and labels. (2) Visually
    and statistically compare different dendrograms to one another.

# The original CRAN metadata for this package was:

# Package: dendextend
# Type: Package
# Title: Extending R's Dendrogram Functionality
# Version: 1.1.2
# Date: 2015-10-30
# Authors@R: c(person("Tal", "Galili", role = c("aut", "cre", "cph"), email = "tal.galili@gmail.com", comment = "http://www.r-statistics.com"), person("Gavin", "Simpson", role = "ctb"), person("Gregory","Jefferis", role = "ctb", email = "jefferis@gmail.com", comment ="imported code from his dendroextras package"), person("Marco", "Gallotta", role = "ctb", comment = "a.k.a: marcog") , person("Johan", "Renaudie", role = "ctb", comment = "https://github.com/plannapus"), person("The R Core Team", role = "ctb", comment = "Thanks for the Infastructure, and code in the examples"), person("Kurt", "Hornik", role = "ctb"), person("Uwe", "Ligges", role = "ctb"), person("Andrej-Nikolai", "Spiess", role = "ctb"), person("Steve", "Horvath",email = "SHorvath@mednet.ucla.edu", role = "ctb"), person("Peter", "Langfelder",email = "Peter.Langfelder@gmail.com", role = "ctb"), person("skullkey", role = "ctb"), person("Mark", "Van Der Loo", email = "mark.vanderloo@gmail.com", comment = "https://github.com/markvanderloo d3dendrogram", role = "ctb"), person("Andrie", "de Vries", email = "apdevries@gmail.com", comment = "ggdendro author", role = "ctb"), person("Zuguang", "Gu", email = "z.gu@dkfz-heidelberg.de", comment = "circlize author", role = "ctb"), person("Yoav", "Benjamini", role = "ths"))
# Description: Offers a set of functions for extending dendrogram objects in R, letting you visualize and compare trees of hierarchical clusterings. You can (1) Adjust a tree's graphical parameters - the color, size, type, etc of its branches, nodes and labels. (2) Visually and statistically compare different dendrograms to one another.
# Depends: R (>= 3.0.0)
# Imports: utils, stats, magrittr (>= 1.0.1), whisker
# Suggests: dendextendRcpp (>= 0.5.0), knitr, testthat, colorspace, ggplot2, plyr, ape, profdpm, microbenchmark, gplots, NMF, d3heatmap, dynamicTreeCut, pvclust, corrplot, DendSer, MASS, cluster, circlize (>= 0.2.5), covr
# Enhances: ggdendro, labeltodendro,dendroextras, data.table, rpart
# VignetteBuilder: knitr
# LazyData: true
# License: GPL-2 | GPL-3
# URL: http://cran.r-project.org/package=dendextend, https://github.com/talgalili/dendextend/, http://www.r-statistics.com/tag/dendextend/, http://bioinformatics.oxfordjournals.org/content/early/2015/08/18/bioinformatics.btv428
# BugReports: https://github.com/talgalili/dendextend/issues
# NeedsCompilation: no
# Packaged: 2015-10-31 08:55:48 UTC; junior
# Author: Tal Galili [aut, cre, cph] (http://www.r-statistics.com), Gavin Simpson [ctb], Gregory Jefferis [ctb] (imported code from his dendroextras package), Marco Gallotta [ctb] (a.k.a: marcog), Johan Renaudie [ctb] (https://github.com/plannapus), The R Core Team [ctb] (Thanks for the Infastructure, and code in the examples), Kurt Hornik [ctb], Uwe Ligges [ctb], Andrej-Nikolai Spiess [ctb], Steve Horvath [ctb], Peter Langfelder [ctb], skullkey [ctb], Mark Van Der Loo [ctb] (https://github.com/markvanderloo d3dendrogram), Andrie de Vries [ctb] (ggdendro author), Zuguang Gu [ctb] (circlize author), Yoav Benjamini [ths]
# Maintainer: Tal Galili <tal.galili@gmail.com>
# Repository: CRAN
# Date/Publication: 2015-10-31 16:16:02

# See
# http://docs.continuum.io/conda/build.html for
# more information about meta.yaml