r-pscbs

Summary

Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome. Both tumor-normal paired and tumor-only analyses are supported.

Versions

  • 0.60.0

License

GPL (>= 2)

Meta

package:
  name: r-pscbs
  # Note that conda versions cannot contain -, so any -'s in the version have
  # been replaced with _'s.
  version: "0.60.0"

source:
  fn: PSCBS_0.60.0.tar.gz
  url:
    - http://cran.r-project.org/src/contrib/PSCBS_0.60.0.tar.gz
    - http://cran.r-project.org/src/contrib/Archive/PSCBS/PSCBS_0.60.0.tar.gz


  # You can add a hash for the file here, like md5 or sha1
  # md5: 49448ba4863157652311cc5ea4fea3ea
  # sha1: 3bcfbee008276084cbb37a2b453963c61176a322
  # patches:
   # List any patch files here
   # - fix.patch

build:
  # If this is a new build for the same version, increment the build
  # number. If you do not include this key, it defaults to 0.
  # number: 1

  # This is required to make R link correctly on Linux.
  rpaths:
    - lib/R/lib/
    - lib/

# Suggests: Hmisc (>= 3.16-0), R.rsp (>= 0.20.0), R.devices (>= 2.13.1), ggplot2 (>= 1.0.1), aroma.light (>= 2.2.1)
requirements:
  build:
    - r
    - bioconductor-dnacopy
    - r-r.cache >=0.12.0
    - r-r.methodss3 >=1.7.0
    - r-r.oo >=1.19.0
    - r-r.utils >=2.1.0
    - r-future >=0.8.2
    - r-listenv >=0.5.0
    - r-matrixstats >=0.15.0

  run:
    - r
    - bioconductor-dnacopy
    - r-r.cache >=0.12.0
    - r-r.methodss3 >=1.7.0
    - r-r.oo >=1.19.0
    - r-r.utils >=2.1.0
    - r-future >=0.8.2
    - r-listenv >=0.5.0
    - r-matrixstats >=0.15.0

test:
  commands:
    # You can put additional test commands to be run here.
    - $R -e "library('PSCBS')" # [not win]
    - "\"%R%\" -e \"library('PSCBS')\"" # [win]

  # You can also put a file called run_test.py, run_test.sh, or run_test.bat
  # in the recipe that will be run at test time.

  # requires:
    # Put any additional test requirements here.

about:
  home: !!python/unicode 'https://github.com/HenrikBengtsson/PSCBS'

  license: GPL (>= 2)
  summary: !!python/unicode 'Segmentation of allele-specific DNA copy number data and detection
    of regions with abnormal copy number within each parental chromosome.  Both tumor-normal
    paired and tumor-only analyses are supported.'


# The original CRAN metadata for this package was:

# Package: PSCBS
# Version: 0.60.0
# Depends: R (>= 3.1.1), utils
# Imports: R.methodsS3 (>= 1.7.0), R.oo (>= 1.19.0), R.utils (>= 2.1.0), R.cache (>= 0.12.0), matrixStats (>= 0.15.0), DNAcopy (>= 1.40.0), listenv (>= 0.5.0), future (>= 0.8.2), parallel
# Suggests: Hmisc (>= 3.16-0), R.rsp (>= 0.20.0), R.devices (>= 2.13.1), ggplot2 (>= 1.0.1), aroma.light (>= 2.2.1)
# SuggestsNote: BioC (>= 3.0), Recommended: Hmisc, aroma.light
# VignetteBuilder: R.rsp
# Date: 2015-11-17
# Title: Analysis of Parent-Specific DNA Copy Numbers
# Authors@R: c( person("Henrik", "Bengtsson", role=c("aut", "cre", "cph"), email="henrikb@braju.com"), person("Pierre", "Neuvial", role="aut"), person("Venkatraman E.", "Seshan", role="aut"), person("Adam B.", "Olshen", role="aut"), person("Paul T.", "Spellman", role="aut"), person("Richard A.", "Olshen", role="aut"))
# Description: Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome.  Both tumor-normal paired and tumor-only analyses are supported.
# License: GPL (>= 2)
# LazyLoad: TRUE
# ByteCompile: TRUE
# biocViews: aCGH, CopyNumberVariants, SNP, Microarray, OneChannel, TwoChannel, Genetics
# URL: https://github.com/HenrikBengtsson/PSCBS
# BugReports: https://github.com/HenrikBengtsson/PSCBS/issues
# NeedsCompilation: no
# Packaged: 2015-11-17 17:52:13 UTC; hb
# Author: Henrik Bengtsson [aut, cre, cph], Pierre Neuvial [aut], Venkatraman E. Seshan [aut], Adam B. Olshen [aut], Paul T. Spellman [aut], Richard A. Olshen [aut]
# Maintainer: Henrik Bengtsson <henrikb@braju.com>
# Repository: CRAN
# Date/Publication: 2015-11-18 09:31:06

# See
# http://docs.continuum.io/conda/build.html for
# more information about meta.yaml