r-rcircos

Summary

A simple and flexible way to generate Circos 2D track plot images for genomic data visualization is implemented in this package. The types of plots include: heatmap, histogram, lines, scatterplot, tiles and plot items for further decorations include connector, link (lines and ribbons), and text (gene) label. All functions require only R graphics package that comes with R base installation.

Versions

  • 1.1.3

License

GPL (>= 2)

Meta

package:
  name: r-rcircos
  # Note that conda versions cannot contain -, so any -'s in the version have
  # been replaced with _'s.
  version: "1.1.3"

source:
  fn: RCircos_1.1.3.tar.gz
  url:
    - http://cran.r-project.org/src/contrib/RCircos_1.1.3.tar.gz
    - http://cran.r-project.org/src/contrib/Archive/RCircos/RCircos_1.1.3.tar.gz


  # You can add a hash for the file here, like md5 or sha1
  # md5: 49448ba4863157652311cc5ea4fea3ea
  # sha1: 3bcfbee008276084cbb37a2b453963c61176a322
  # patches:
   # List any patch files here
   # - fix.patch

build:
  # If this is a new build for the same version, increment the build
  # number. If you do not include this key, it defaults to 0.
  # number: 1

  # This is required to make R link correctly on Linux.
  rpaths:
    - lib/R/lib/
    - lib/


requirements:
  build:
    - r

  run:
    - r

test:
  commands:
    # You can put additional test commands to be run here.
    - $R -e "library('RCircos')" # [not win]
    - "\"%R%\" -e \"library('RCircos')\"" # [win]

  # You can also put a file called run_test.py, run_test.sh, or run_test.bat
  # in the recipe that will be run at test time.

  # requires:
    # Put any additional test requirements here.

about:
  home: http://bitbucket.org/henryhzhang/rcircos
  license: GPL (>= 2)
  summary: 'A simple and flexible way to generate Circos 2D track plot images for genomic data
    visualization is implemented in this package. The types of plots include: heatmap,
    histogram, lines, scatterplot, tiles and plot items for further decorations include
    connector, link (lines and ribbons), and text (gene) label. All functions require
    only R graphics package that comes with R base installation.  '


# The original CRAN metadata for this package was:

# Package: RCircos
# Type: Package
# Title: Circos 2D Track Plot
# Version: 1.1.3
# Date: 2015-12-20
# Author: Hongen Zhang
# Maintainer: Hongen Zhang <hzhang@mail.nih.gov>
# Description: A simple and flexible way to generate Circos 2D track plot images for genomic data visualization is implemented in this package. The types of plots include: heatmap, histogram, lines, scatterplot, tiles and plot items for further decorations include connector, link (lines and ribbons), and text (gene) label. All functions require only R graphics package that comes with R base installation.
# License: GPL (>= 2)
# Depends: R (>= 2.10)
# URL: http://bitbucket.org/henryhzhang/rcircos
# NeedsCompilation: no
# Packaged: 2015-12-11 22:17:24 UTC; hzhang
# Repository: CRAN
# Date/Publication: 2015-12-14 17:29:13

# See
# http://docs.continuum.io/conda/build.html for
# more information about meta.yaml