rnashapes

Summary

RNAshape abstraction maps structures to a tree-like domain of shapes, retaining adjacency and nesting of structural features, but disregarding helix lengths. Shape abstraction integrates well with dynamic programming algorithms, and hence it can be applied during structure prediction rather than afterwards. This avoids exponential explosion and can still give us a non-heuristic and complete account of properties of the molecule’s folding space.

Versions

  • 2.1.6

License

Meta

about:
  home: http://bibiserv.techfak.uni-bielefeld.de/rnashapes
  license: ''
  summary: 'RNAshape abstraction maps structures to a tree-like domain of shapes,
    retaining adjacency and nesting of structural features, but disregarding helix
    lengths. Shape abstraction integrates well with dynamic programming algorithms,
    and hence it can be applied during structure prediction rather than afterwards.
    This avoids exponential explosion and can still give us a non-heuristic and complete
    account of properties of the molecule''s folding space.'
build:
  number: 0
package:
  name: rnashapes
  version: 2.1.6
requirements:
  build: []
  run: []
source:
  fn: RNAshapes-2.1.6.tar.gz
  sha256: 6923af49f931efa4f3ad2a05f87a8e5222b6f865d0347e5598de3661e73bb81b
  url: https://github.com/bgruening/download_store/raw/master/RNAshapes/RNAshapes-2.1.6.tar.gz
test:
  commands:
  - RNAshapes  -h &> /dev/null