rnastructure

Summary

RNAstructure is a complete package for RNA and DNA secondary structure prediction and analysis. It includes algorithms for secondary structure prediction, including facility to predict base pairing probabilities. It also can be used to predict bimolecular structures and can predict the equilibrium binding affinity of an oligonucleotide to a structured RNA target. This is useful for siRNA design. It can also predict secondary structures common to two, unaligned sequences, which is much more accurate than single sequence secondary structure prediction. Finally, RNAstructure can take a number of different types of experiment mapping data to constrain or restrain structure prediction. These include chemical mapping, enzymatic mapping, NMR, and SHAPE data.

Versions

  • 5.7

License

Meta

about:
  home: http://rna.urmc.rochester.edu/RNAstructure.html
  license: ''
  summary: 'RNAstructure is a complete package for RNA and DNA secondary structure  prediction
    and analysis. It includes algorithms for   secondary structure  prediction, including
    facility to predict base pairing probabilities. It  also can be used to predict
    bimolecular structures and can predict the  equilibrium binding affinity of an
    oligonucleotide to a structured RNA  target. This is useful for siRNA design.
    It can also predict secondary  structures common to two, unaligned sequences,
    which is much more accurate  than single sequence secondary structure prediction.
    Finally, RNAstructure  can take a number of different types of experiment mapping
    data to constrain  or restrain structure prediction. These include chemical mapping,
    enzymatic  mapping, NMR, and SHAPE data.'
build:
  number: 0
package:
  name: rnastructure
  version: '5.7'
requirements:
  build: []
  run: []
source:
  fn: RNAstructure-5.7.tgz
  sha256: 7d7060c2180b95e0d0e0a840499df48de3571e37ca6bef51325377fe7ca28ae6
  url: http://depot.galaxyproject.org/package/source/RNAstructure-5.7.tgz
test:
  commands:
    - refold -h
    - ProbKnot -h
    - dot2ct -h