rseg

Summary

The RSEG software package is used to analyze ChIP-Seq data, especially for identifying genomic regions and their boundaries marked by diffusive histone modification markers, such as H3K36me3 and H3K27me3.

Versions

  • 0.4.9

License

GPLv3

Meta

package:
  name: rseg
  version: "0.4.9"

source:
  fn: rseg-0.4.9.tar.gz
  url: https://github.com/smithlabcode/rseg/archive/rseg-0.4.9.tar.gz
  md5: 890d9d3b364270ab62da012cd87a79ee
  patches:
    - makefile.patch

build:
  number: 0

requirements:
  build:
  - zlib
  - gcc

  run:
  - zlib
  - libgcc

test:
  commands:
    - rseg -about > /dev/null 2>&1
    - rseg-diff -about > /dev/null 2>&1
    - deadzones -about > /dev/null 2>&1

about:
  home: http://smithlabresearch.org/software/rseg
  license: GPLv3
  summary: The RSEG software package is used to analyze ChIP-Seq data, especially for identifying genomic regions and their boundaries marked by diffusive histone modification markers, such as H3K36me3 and H3K27me3.