sga

Summary

SGA - String Graph Assembler. SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.

Versions

  • 0.10.13

License

GPLv3

Meta

package:
  name: sga
  version: "0.10.13"
source:
  fn: v0.10.13.tar.gz
  url: https://github.com/jts/sga/archive/v0.10.13.tar.gz
  md5: d4f6aefc48c940dba96cc6513649ecdd
requirements:
  build:
    - bamtools
  run:
    - bamtools
about:
  home: https://github.com/jts/sga
  license: GPLv3
  summary: SGA - String Graph Assembler. SGA is a de novo assembler for DNA sequence reads. It is based on Gene Myers string graph formulation of assembly and uses the FM-index/Burrows-Wheeler transform to efficiently find overlaps between sequence reads.