snippy

Summary

Rapid bacterial SNP calling and core genome alignments

Versions

  • 2.9

License

GPL2

Meta

package:
  name: snippy
  version: '2.9'

source:
  fn: v2.9.zip
  md5: a0a0f14510c37b5a1f36be06e2afdf3c
  url: https://github.com/tseemann/snippy/archive/v2.9.zip

build:
  number: 0

requirements:
  build:
    - perl
    - perl-bioperl
    - perl-app-cpanminus
    - perl-module-build
    - bwa
    - samtools
    - parallel
    - freebayes
    - vcflib
    - vcftools
    - snpeff
  run:
    - perl
    - perl-bioperl
    - bwa
    - samtools
    - parallel
    - freebayes
    - vcflib
    - vcftools
    - snpeff

test:
  commands:
  - snippy --version

about:
  home: https://github.com/tseemann/snippy
  license: GPL2
  summary: Rapid bacterial SNP calling and core genome alignments