trimmomatic

Summary

A flexible read trimming tool for Illumina NGS data

Versions

  • 0.35

License

GPLv3

Meta

about:
  home: 'http://www.usadellab.org/cms/?page=trimmomatic'
  license: "GPLv3"
  summary: "A flexible read trimming tool for Illumina NGS data"

package:
  name: trimmomatic
  version: '0.35'

build:
  number: 2

source:
  fn: Trimmomatic-0.35.zip
  md5: 564e62f4f0f9f56d22762b237d4c69c4
  url: http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-0.35.zip

requirements:
  run:
      - java-jdk

test:
    commands:
      #- trimmomatic -version # trimmomatic currently lacks a simple argument that gives
      # a zero exit code, so...
      # check if the jar file (as a zip file) is valid instead:
      - "unzip -t $PREFIX/share/$PKG_NAME-$PKG_VERSION-$PKG_BUILDNUM/trimmomatic.jar &> /dev/null"